Digital archiving is a replacement for the traditional paper archive as it serves the same purpose of preserving and protecting documents created in a digital format. In this study, we design and developed a manuscript online digital archiving management system for the Eastern Visayas State University Ormoc Campus. The system addresses the challenges related with traditional hardbound kept in a designated place by the department and library. The researcher develop a digital platform with the aim of providing an effective archival management system for student theses and capstone manuscripts projects. The researcher concede the need of efficient solutions of traditional archival thesis and capstone project manuscripts. We conducted a qualitative research study and was utilized through a case study approach with both interviews and observations as gathering information. We used a Agile concepts with the combination of Rapid Application Development (RAD) to maintain a adaptable and iterative approach throughout the development process of the system. The findings of this study indicate that existing archival systems lack of essential features to effectively manage thesis and capstone project manuscripts. The development of this web-based online digital archiving system is significant for Eastern Visayas State University - Ormoc Campus and the researcher, as it provides unlimited capacity for uploading documents, but it also imposing specific limits to the needs of thesis and capstone project manuscript within Eastern Visayas State University-Ormoc Campus.